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Crystal structure of the ROQ domain of human Roquin-2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 15% PEG6000, 100 mM Hepes, 100 mM KCl
Crystal Properties Matthews coefficient Solvent content 2.23 44.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.76 α = 90 b = 60.868 β = 90 c = 169.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.1 0.169 14.4 12.3 17819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 49.438 16909 910 99.05 0.22596 0.2241 0.2255 0.26009 0.2489 RANDOM 29.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.37 -4.86 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.627 r_dihedral_angle_3_deg 16.298 r_dihedral_angle_4_deg 16.29 r_dihedral_angle_1_deg 5.461 r_long_range_B_refined 4.612 r_long_range_B_other 4.611 r_scangle_other 3.047 r_mcangle_it 2.53 r_mcangle_other 2.53 r_scbond_it 1.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.627 r_dihedral_angle_3_deg 16.298 r_dihedral_angle_4_deg 16.29 r_dihedral_angle_1_deg 5.461 r_long_range_B_refined 4.612 r_long_range_B_other 4.611 r_scangle_other 3.047 r_mcangle_it 2.53 r_mcangle_other 2.53 r_scbond_it 1.847 r_scbond_other 1.846 r_mcbond_other 1.558 r_mcbond_it 1.557 r_angle_refined_deg 1.43 r_angle_other_deg 1.35 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4748 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing