4ZGV

The Crystal Structure of the Ferredoxin Receptor FusA from Pectobacterium atrosepticum SCRI1043


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.528911-14 % PVP, 14 % PEG 2000 MME, 0.1 Tris, 0.05 M MgCl2 pH 7.5, with a FusA concentration of 15 mg.ml-1 in 50 mM Tris, 200 mM NaCl, 0.8-1 % (v/v) beta-OG, 0.4 % LDAO pH 7.9, at 289 K
Crystal Properties
Matthews coefficientSolvent content
3.8768.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 137.274α = 90
b = 79.886β = 90.71
c = 137.905γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2014-07-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9765DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.248.951000.30576.649734
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.311001.731.36.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT3.248.9547173251199.880.2210.218340.271RANDOM81.354
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.02-0.134.16-2.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.556
r_dihedral_angle_3_deg19.156
r_dihedral_angle_4_deg15.905
r_dihedral_angle_1_deg8.696
r_long_range_B_other8.323
r_long_range_B_refined8.321
r_scangle_other5.636
r_mcangle_it4.937
r_mcangle_other4.937
r_scbond_it3.394
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.556
r_dihedral_angle_3_deg19.156
r_dihedral_angle_4_deg15.905
r_dihedral_angle_1_deg8.696
r_long_range_B_other8.323
r_long_range_B_refined8.321
r_scangle_other5.636
r_mcangle_it4.937
r_mcangle_other4.937
r_scbond_it3.394
r_scbond_other3.388
r_mcbond_it3.009
r_mcbond_other3.006
r_angle_refined_deg1.598
r_angle_other_deg1.041
r_chiral_restr0.091
r_bond_refined_d0.011
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12900
Nucleic Acid Atoms
Solvent Atoms2
Heterogen Atoms112

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing