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Crystal structure of AKR1C3 complexed with glicazide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 15%-20% PEG8000, 100mM MES, 0.14M NaCl
Crystal Properties Matthews coefficient Solvent content 2.41 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.652 α = 74.52 b = 49.156 β = 86.84 c = 83.476 γ = 69.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2014-12-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 80.368 100 0.113 11.2 5.3 46034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.516 0.516 0.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 80.368 43707 2326 99.95 0.17508 0.17284 0.1863 0.21757 0.2288 RANDOM 22.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.48 0.12 -1.75 -0.69 0.49 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.847 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_4_deg 12.818 r_dihedral_angle_1_deg 6.139 r_long_range_B_refined 6.056 r_long_range_B_other 5.923 r_scangle_other 4.386 r_mcangle_it 2.831 r_mcangle_other 2.831 r_scbond_it 2.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.847 r_dihedral_angle_3_deg 13.621 r_dihedral_angle_4_deg 12.818 r_dihedral_angle_1_deg 6.139 r_long_range_B_refined 6.056 r_long_range_B_other 5.923 r_scangle_other 4.386 r_mcangle_it 2.831 r_mcangle_other 2.831 r_scbond_it 2.753 r_scbond_other 2.753 r_angle_refined_deg 1.938 r_mcbond_it 1.874 r_mcbond_other 1.872 r_angle_other_deg 0.899 r_chiral_restr 0.107 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5089 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction