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Crystal structure of OXA-58 with disordered active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 30% PEG 1500
Crystal Properties Matthews coefficient Solvent content 1.7008 27.6791
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.36 α = 90 b = 39.79 β = 91.2 c = 72.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2013-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 37.38 98.28 0.03 16.39 2 10289
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.235 2.314 93.1 0.15 5.84 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.23 37.38 9789 500 98.19 0.1951 0.19218 0.1998 0.25259 0.2518 RANDOM 34.573
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.33 -0.59 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.027 r_dihedral_angle_4_deg 13.579 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_1_deg 6.606 r_long_range_B_refined 2.768 r_long_range_B_other 2.755 r_angle_refined_deg 1.315 r_angle_other_deg 0.9 r_mcangle_it 0.743 r_mcangle_other 0.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.027 r_dihedral_angle_4_deg 13.579 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_1_deg 6.606 r_long_range_B_refined 2.768 r_long_range_B_other 2.755 r_angle_refined_deg 1.315 r_angle_other_deg 0.9 r_mcangle_it 0.743 r_mcangle_other 0.743 r_mcbond_it 0.392 r_mcbond_other 0.392 r_scangle_other 0.377 r_scbond_it 0.172 r_scbond_other 0.172 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1789 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data reduction HKL-2000 data scaling MOLREP phasing