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Structure of OBP3 from the currant-lettuce aphid Nasonovia ribisnigri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 20% PEG 6000, 0.1 M Sodium Citrate pH 5 10mM ZnCl2
Crystal Properties Matthews coefficient Solvent content 2.55 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.25 α = 90 b = 87.25 β = 90 c = 95.08 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 59.16 100 0.14 17.5 20 27953
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.07 100 0.66 4.7 20.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.02 59.16 26520 1402 99.97 0.16576 0.16359 0.1722 0.20743 0.2116 RANDOM 25.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.18 -0.37 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.055 r_dihedral_angle_3_deg 12.332 r_dihedral_angle_1_deg 9.46 r_dihedral_angle_4_deg 7.3 r_long_range_B_refined 6.777 r_long_range_B_other 6.444 r_scangle_other 4.155 r_scbond_it 2.678 r_scbond_other 2.671 r_mcangle_it 2.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.055 r_dihedral_angle_3_deg 12.332 r_dihedral_angle_1_deg 9.46 r_dihedral_angle_4_deg 7.3 r_long_range_B_refined 6.777 r_long_range_B_other 6.444 r_scangle_other 4.155 r_scbond_it 2.678 r_scbond_other 2.671 r_mcangle_it 2.353 r_mcangle_other 2.353 r_angle_refined_deg 2.116 r_angle_other_deg 1.969 r_mcbond_it 1.532 r_mcbond_other 1.531 r_chiral_restr 0.127 r_bond_refined_d 0.026 r_bond_other_d 0.014 r_gen_planes_refined 0.014 r_gen_planes_other 0.011 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2767 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing