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C. bescii Family 3 pectate lyase mutant E84A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris pH 8.4 and 66.8% MPD
Crystal Properties Matthews coefficient Solvent content 2.32 47.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.27 α = 90 b = 145.57 β = 90 c = 160.077 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2013-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.7 17.29 6.42 66566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 98.4 2.71 3.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.5 50 63136 3327 99.63 0.1533 0.15157 0.18641 0.188 RANDOM 15.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.03 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.211 r_dihedral_angle_4_deg 18.025 r_dihedral_angle_3_deg 12.335 r_dihedral_angle_1_deg 7.032 r_long_range_B_refined 6.684 r_long_range_B_other 6.215 r_scangle_other 3.808 r_scbond_it 2.54 r_scbond_other 2.539 r_angle_refined_deg 2.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.211 r_dihedral_angle_4_deg 18.025 r_dihedral_angle_3_deg 12.335 r_dihedral_angle_1_deg 7.032 r_long_range_B_refined 6.684 r_long_range_B_other 6.215 r_scangle_other 3.808 r_scbond_it 2.54 r_scbond_other 2.539 r_angle_refined_deg 2.394 r_mcangle_it 2.201 r_mcangle_other 2.201 r_mcbond_it 1.533 r_mcbond_other 1.531 r_angle_other_deg 0.961 r_chiral_restr 0.141 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2960 Nucleic Acid Atoms Solvent Atoms 491 Heterogen Atoms 77
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling MOLREP phasing