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ASH1L SET domain Q2265A mutant in complex with S-adenosyl methionine (SAM)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YNM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 PEG 4000, magnesium chloride, Tris
Crystal Properties Matthews coefficient Solvent content 2.34 47.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.682 α = 91.57 b = 61.773 β = 93.83 c = 73.233 γ = 90.46
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 96 0.06 8.1 2 40091
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 97.3 0.255 2 2023
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4YNM 2.3 73.04 38087 2003 95.7 0.2517 0.2489 0.2462 0.303 0.301 RANDOM 38.039
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.15 -0.15 0.16 -0.09 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.506 r_dihedral_angle_3_deg 18.956 r_dihedral_angle_4_deg 18.546 r_dihedral_angle_1_deg 6.788 r_scangle_it 4.041 r_scbond_it 2.538 r_mcangle_it 1.836 r_angle_refined_deg 1.644 r_mcbond_it 0.987 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.506 r_dihedral_angle_3_deg 18.956 r_dihedral_angle_4_deg 18.546 r_dihedral_angle_1_deg 6.788 r_scangle_it 4.041 r_scbond_it 2.538 r_mcangle_it 1.836 r_angle_refined_deg 1.644 r_mcbond_it 0.987 r_chiral_restr 0.108 r_bond_refined_d 0.018 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6920 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction MOLREP phasing