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Crystal structure of MepR like protein complexed with pseudoligands
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 291 0.1M phosphate citrate, 2.4 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.63 66.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.172 α = 90 b = 111.172 β = 90 c = 67.368 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 certical focusing toroidal, rhodium coated 2014-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97958 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 50 99.1 0.094 16.8 20.6 13502
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.2 98.9 0.337 18.1 646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.16 26.72 12822 670 99.02 0.2144 0.2131 0.2139 0.2384 0.2056 RANDOM 45.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.43 -0.43 1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.241 r_dihedral_angle_4_deg 19.581 r_dihedral_angle_3_deg 17.412 r_dihedral_angle_1_deg 5.079 r_angle_refined_deg 1.78 r_mcangle_it 1.652 r_scbond_it 1.644 r_mcbond_it 0.945 r_chiral_restr 0.085 r_bond_refined_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.241 r_dihedral_angle_4_deg 19.581 r_dihedral_angle_3_deg 17.412 r_dihedral_angle_1_deg 5.079 r_angle_refined_deg 1.78 r_mcangle_it 1.652 r_scbond_it 1.644 r_mcbond_it 0.945 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1156 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 62
Software Software Software Name Purpose SCALEPACK data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling