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The crystal structure of Campylobacter jejuni N-acetyltransferase PseH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JJX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 291 22-24% PEG MME 550, 4mM reduced glutathione, 4mM oxidized glutathione, 0.1M phosphate-citrate
Crystal Properties Matthews coefficient Solvent content 2.5 50.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.558 α = 90 b = 111.033 β = 90 c = 41.045 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 98.3 0.066 0.073 0.031 23.2 5.5 14574
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.5 0.421 0.464 0.191 0.904 5.6 1427
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JJX 1.95 30 13737 736 97.73 0.1989 0.1971 0.2038 0.2329 0.2012 RANDOM 32.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 1.46 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.619 r_dihedral_angle_3_deg 14.888 r_dihedral_angle_1_deg 6.312 r_scangle_it 4.777 r_angle_other_deg 4.093 r_scbond_it 2.911 r_mcangle_it 1.792 r_angle_refined_deg 1.555 r_mcbond_it 0.92 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.619 r_dihedral_angle_3_deg 14.888 r_dihedral_angle_1_deg 6.312 r_scangle_it 4.777 r_angle_other_deg 4.093 r_scbond_it 2.911 r_mcangle_it 1.792 r_angle_refined_deg 1.555 r_mcbond_it 0.92 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1175 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction PHASER phasing PDB_EXTRACT data extraction HKL-2000 data scaling