☰ Navigation Tabs
Structure of active-like neurotensin receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GRV PDB entry 4GRV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 19.8-23.4% PEG400, 80 mM HEPES, 50 mM lithium citrate, 2 mM TCEP
Crystal Properties Matthews coefficient Solvent content 3.04 59.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.84 α = 90 b = 88.44 β = 90 c = 161.33 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.0332 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 34.2 99.5 0.15 10.8 7.2 22591 42.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 98.7 0.75 1.5 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4GRV 2.6 34 21352 1209 99.35 0.23248 0.22983 0.2352 0.27972 0.2789 RANDOM 57.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -3.39 3.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.142 r_dihedral_angle_3_deg 15.549 r_dihedral_angle_4_deg 14.373 r_dihedral_angle_1_deg 5.208 r_long_range_B_refined 4.312 r_long_range_B_other 4.312 r_scangle_other 1.773 r_mcangle_other 1.484 r_mcangle_it 1.477 r_angle_refined_deg 1.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.142 r_dihedral_angle_3_deg 15.549 r_dihedral_angle_4_deg 14.373 r_dihedral_angle_1_deg 5.208 r_long_range_B_refined 4.312 r_long_range_B_other 4.312 r_scangle_other 1.773 r_mcangle_other 1.484 r_mcangle_it 1.477 r_angle_refined_deg 1.185 r_scbond_it 1.104 r_scbond_other 1.103 r_mcbond_it 0.864 r_mcbond_other 0.849 r_angle_other_deg 0.768 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3772 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing