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Beta-ketoacyl-acyl carrier protein synthase III-2 (FabH2)(C113A) from Vibrio cholerae
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 289 0.2M Sodium malonate pH 7.0,20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.34 47.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.459 α = 90 b = 61.521 β = 90 c = 69.676 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Beyllium Lenses 2013-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 98.3 0.068 0.075 0.032 11.4 5 47520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.64 87.3 0.376 0.43 0.205 0.905 4 2077
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WZU 1.61 50 45088 2408 98.96 0.153 0.1517 0.1653 0.1763 0.1886 RANDOM 17.768
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 0.53 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.12 r_dihedral_angle_4_deg 17.519 r_dihedral_angle_3_deg 11.288 r_dihedral_angle_1_deg 6.331 r_mcangle_it 1.398 r_angle_refined_deg 1.311 r_mcbond_it 0.887 r_mcbond_other 0.886 r_angle_other_deg 0.79 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.12 r_dihedral_angle_4_deg 17.519 r_dihedral_angle_3_deg 11.288 r_dihedral_angle_1_deg 6.331 r_mcangle_it 1.398 r_angle_refined_deg 1.311 r_mcbond_it 0.887 r_mcbond_other 0.886 r_angle_other_deg 0.79 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2685 Nucleic Acid Atoms Solvent Atoms 424 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction MOLREP phasing PDB_EXTRACT data extraction HKL-3000 data scaling