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Crystal Structure of the Extracellular Domain of ZIP4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 18% PEG 3350, 50 mM NH4Cl
Crystal Properties Matthews coefficient Solvent content 1.83 32.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.182 α = 90 b = 68.731 β = 95.79 c = 93.971 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.979 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.76 40 99.4 0.175 0.179 0.038 5.4 21.7 11028
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.76 2.9 94.9 0.927 0.952 0.214 0.917 18 1043
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.76 38.65 9913 1104 98.17 0.2117 0.2058 0.2098 0.2639 0.2622 RANDOM 58.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.49 0.55 -3.61 -3.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.069 r_dihedral_angle_3_deg 20.258 r_dihedral_angle_4_deg 16.417 r_mcangle_it 6.077 r_dihedral_angle_1_deg 5.457 r_mcbond_it 3.826 r_mcbond_other 3.826 r_angle_refined_deg 1.44 r_angle_other_deg 1.08 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.069 r_dihedral_angle_3_deg 20.258 r_dihedral_angle_4_deg 16.417 r_mcangle_it 6.077 r_dihedral_angle_1_deg 5.457 r_mcbond_it 3.826 r_mcbond_other 3.826 r_angle_refined_deg 1.44 r_angle_other_deg 1.08 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3078 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data scaling PHASER phasing