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Gallus interleukin-1 beta mutant - E118A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WRY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.15 M (NH4)2SO4, 0.1 M Tris, 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 1.94 36.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.67 α = 90 b = 35.758 β = 90 c = 102.274 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 24.66 98.1 13.6 4.9 7853
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WRY 2.12 24.66 6564 324 87.68 0.19251 0.1898 0.1997 0.24716 0.2314 RANDOM 26.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.22 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.955 r_dihedral_angle_3_deg 16.221 r_dihedral_angle_4_deg 14.977 r_dihedral_angle_1_deg 7.885 r_long_range_B_other 6.366 r_long_range_B_refined 6.365 r_scangle_other 3.903 r_mcangle_it 3.684 r_mcangle_other 3.682 r_scbond_it 2.337
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.955 r_dihedral_angle_3_deg 16.221 r_dihedral_angle_4_deg 14.977 r_dihedral_angle_1_deg 7.885 r_long_range_B_other 6.366 r_long_range_B_refined 6.365 r_scangle_other 3.903 r_mcangle_it 3.684 r_mcangle_other 3.682 r_scbond_it 2.337 r_scbond_other 2.336 r_mcbond_other 2.083 r_mcbond_it 2.082 r_angle_refined_deg 1.456 r_angle_other_deg 0.796 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1175 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data scaling