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Gallus interleukin-1 mutant - E118K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WRY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.15 M (NH4)2SO4, 0.1 M Tris, 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 1.82 32.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.576 α = 90 b = 102.501 β = 90 c = 37.821 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 29.2 98.7 66.87 8.8 17881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WRY 1.63 29.2 16734 898 98.64 0.19915 0.19764 0.2075 0.22893 0.2352 RANDOM 25.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 -1.33 2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.021 r_dihedral_angle_4_deg 20.554 r_dihedral_angle_3_deg 16.792 r_dihedral_angle_1_deg 10.33 r_long_range_B_refined 8.585 r_long_range_B_other 8.576 r_scangle_other 6.216 r_mcangle_it 5.248 r_mcangle_other 5.245 r_scbond_it 4.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.021 r_dihedral_angle_4_deg 20.554 r_dihedral_angle_3_deg 16.792 r_dihedral_angle_1_deg 10.33 r_long_range_B_refined 8.585 r_long_range_B_other 8.576 r_scangle_other 6.216 r_mcangle_it 5.248 r_mcangle_other 5.245 r_scbond_it 4.014 r_scbond_other 4.011 r_mcbond_it 3.373 r_mcbond_other 3.323 r_angle_refined_deg 2.457 r_angle_other_deg 1.088 r_chiral_restr 0.161 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1237 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data scaling