☰ Navigation Tabs
Crystal structure of human Thyroxine-binding globulin complexed with thyroine at 1.55 Angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CEO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.4 293 PEG3350, (NH4)2SO4, NaCl, Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.6 52.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.46 α = 90 b = 65.46 β = 90 c = 202.71 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97930 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 34.5 99 0.068 12.7 4.5 64376
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 100 0.73 1.9 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ceo 1.55 34.49 60985 3260 98.73 0.18442 0.18333 0.1927 0.2048 0.2142 RANDOM 20.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 0.53 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.68 r_dihedral_angle_4_deg 16.578 r_dihedral_angle_3_deg 12.854 r_dihedral_angle_1_deg 5.89 r_long_range_B_refined 5.271 r_long_range_B_other 5.271 r_scangle_other 2.114 r_mcangle_other 1.637 r_mcangle_it 1.636 r_scbond_it 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.68 r_dihedral_angle_4_deg 16.578 r_dihedral_angle_3_deg 12.854 r_dihedral_angle_1_deg 5.89 r_long_range_B_refined 5.271 r_long_range_B_other 5.271 r_scangle_other 2.114 r_mcangle_other 1.637 r_mcangle_it 1.636 r_scbond_it 1.31 r_scbond_other 1.308 r_angle_refined_deg 1.307 r_mcbond_it 0.972 r_mcbond_other 0.967 r_angle_other_deg 0.713 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement Coot model building MOSFLM data processing PHASER phasing SCALA data reduction SCALEPACK data scaling