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Mutant K20E of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 30%PEG 4000, 0.2M Mg(CH3COO)2, 0.1M MES pH6.0
Crystal Properties Matthews coefficient Solvent content 2.55 51.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.16 α = 90 b = 95.16 β = 90 c = 101.329 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.5 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 43.16 99.9 0.08 11.9 3.8 13460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 0.514 2.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1wne 2.8 43.16 12712 726 99.9 0.25052 0.24943 0.2499 0.27087 0.2751 RANDOM 73.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.12 0.25 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.769 r_dihedral_angle_3_deg 12.413 r_dihedral_angle_4_deg 7.777 r_dihedral_angle_1_deg 3.429 r_long_range_B_refined 1.072 r_long_range_B_other 1.072 r_angle_refined_deg 0.688 r_angle_other_deg 0.674 r_mcangle_it 0.431 r_mcangle_other 0.431
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.769 r_dihedral_angle_3_deg 12.413 r_dihedral_angle_4_deg 7.777 r_dihedral_angle_1_deg 3.429 r_long_range_B_refined 1.072 r_long_range_B_other 1.072 r_angle_refined_deg 0.688 r_angle_other_deg 0.674 r_mcangle_it 0.431 r_mcangle_other 0.431 r_scangle_other 0.278 r_mcbond_it 0.235 r_mcbond_other 0.235 r_scbond_it 0.151 r_scbond_other 0.151 r_chiral_restr 0.043 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3748 Nucleic Acid Atoms 314 Solvent Atoms 12 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing