X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5295PEG 2000 MME, NiSO4, Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
2.6553.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.146α = 90
b = 113.582β = 90
c = 123.151γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2014-04-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID1.0APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5283.4910017.86.752367

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4WHC2.5283.4950295199899.920.20640.20530.2341RANDOM29.103
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.04-0.410.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.639
r_dihedral_angle_4_deg22.671
r_dihedral_angle_3_deg15.542
r_dihedral_angle_1_deg7.295
r_angle_other_deg2.254
r_angle_refined_deg2.046
r_mcangle_it1.441
r_mcbond_it0.863
r_mcbond_other0.863
r_chiral_restr0.128
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.639
r_dihedral_angle_4_deg22.671
r_dihedral_angle_3_deg15.542
r_dihedral_angle_1_deg7.295
r_angle_other_deg2.254
r_angle_refined_deg2.046
r_mcangle_it1.441
r_mcbond_it0.863
r_mcbond_other0.863
r_chiral_restr0.128
r_bond_refined_d0.017
r_bond_other_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10178
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling