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Structure of heme oxygenase-2 containing residues 1-288 lacking the membrane spanning region
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QPP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 20% PEG 1.5K and 100mM BTP pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.41 48.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.69 α = 90 b = 35.69 β = 90 c = 366.706 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97857 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 91.68 99.82 17.36 25.3 8270
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2QPP 2.5 91.68 8270 936 99.82 0.2308 0.2261 0.2376 0.2699 0.276 RANDOM 52.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 1.74 -3.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.284 r_dihedral_angle_4_deg 19.34 r_dihedral_angle_3_deg 14.33 r_dihedral_angle_1_deg 4.975 r_mcangle_it 2.399 r_mcbond_it 1.475 r_mcbond_other 1.475 r_angle_refined_deg 0.947 r_angle_other_deg 0.73 r_chiral_restr 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.284 r_dihedral_angle_4_deg 19.34 r_dihedral_angle_3_deg 14.33 r_dihedral_angle_1_deg 4.975 r_mcangle_it 2.399 r_mcbond_it 1.475 r_mcbond_other 1.475 r_angle_refined_deg 0.947 r_angle_other_deg 0.73 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1708 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 1
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction PHASER phasing DENZO data reduction SCALEPACK data scaling