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High pressure protein crystallography of hen egg white lysozyme at 950 MPa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 Sodium chloride
Crystal Properties Matthews coefficient Solvent content 1.85 33.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.269 α = 90 b = 107.269 β = 90 c = 36.891 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210r 2013-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.71 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.3 19.1 4 36471
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 35.76 30495 1606 87.95 0.2035 0.19916 0.2032 0.28445 0.2894 RANDOM 17.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.363 r_dihedral_angle_4_deg 20.089 r_dihedral_angle_3_deg 17.727 r_dihedral_angle_1_deg 6.906 r_long_range_B_refined 4.956 r_long_range_B_other 4.761 r_scangle_other 2.485 r_mcangle_it 1.992 r_mcangle_other 1.992 r_angle_refined_deg 1.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.363 r_dihedral_angle_4_deg 20.089 r_dihedral_angle_3_deg 17.727 r_dihedral_angle_1_deg 6.906 r_long_range_B_refined 4.956 r_long_range_B_other 4.761 r_scangle_other 2.485 r_mcangle_it 1.992 r_mcangle_other 1.992 r_angle_refined_deg 1.728 r_scbond_it 1.511 r_scbond_other 1.511 r_mcbond_it 1.225 r_mcbond_other 1.225 r_angle_other_deg 0.945 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4004 Nucleic Acid Atoms Solvent Atoms 615 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement