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High pressure protein crystallography of hen egg white lysozyme at 890 MPa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 Sodium chloride
Crystal Properties Matthews coefficient Solvent content 1.91 35.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.203 α = 90 b = 76.203 β = 90 c = 37.643 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210r 2013-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.71 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.3 39.1 5.9 15201
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.6 30.88 14298 758 99.29 0.16557 0.16297 0.1721 0.21668 0.2204 RANDOM 17.601
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.409 r_dihedral_angle_4_deg 20.221 r_dihedral_angle_3_deg 13.884 r_long_range_B_refined 6.761 r_long_range_B_other 6.702 r_dihedral_angle_1_deg 6.674 r_scangle_other 4.694 r_scbond_it 3.068 r_scbond_other 3.065 r_mcangle_other 2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.409 r_dihedral_angle_4_deg 20.221 r_dihedral_angle_3_deg 13.884 r_long_range_B_refined 6.761 r_long_range_B_other 6.702 r_dihedral_angle_1_deg 6.674 r_scangle_other 4.694 r_scbond_it 3.068 r_scbond_other 3.065 r_mcangle_other 2.58 r_mcangle_it 2.575 r_angle_refined_deg 2.036 r_mcbond_other 1.718 r_mcbond_it 1.716 r_angle_other_deg 0.98 r_chiral_restr 0.139 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement