4WFE

Human TRAAK K+ channel in a K+ bound conductive conformation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.827750 mM Tris pH 8.8, 200 mM CaCl2, 27-30% (vol/vol) PEG400, 4% (vol/vol) polypropylene glycol
Crystal Properties
Matthews coefficientSolvent content
3.4163.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.795α = 90
b = 138.522β = 95.08
c = 96.843γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2012-11-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.0332APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.548.299.60.06322.63.869456
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5499.80.93.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4I9W2.548.269456368699.590.200860.199080.2341RANDOM89.526
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.113.03-3.194.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.082
r_dihedral_angle_4_deg17.186
r_dihedral_angle_3_deg15.159
r_long_range_B_refined11.99
r_long_range_B_other11.987
r_scangle_other8.401
r_dihedral_angle_1_deg6.54
r_mcangle_it6.43
r_mcangle_other6.43
r_scbond_it5.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.082
r_dihedral_angle_4_deg17.186
r_dihedral_angle_3_deg15.159
r_long_range_B_refined11.99
r_long_range_B_other11.987
r_scangle_other8.401
r_dihedral_angle_1_deg6.54
r_mcangle_it6.43
r_mcangle_other6.43
r_scbond_it5.8
r_scbond_other5.799
r_mcbond_it4.367
r_mcbond_other4.365
r_angle_refined_deg1.058
r_angle_other_deg0.665
r_chiral_restr0.062
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10398
Nucleic Acid Atoms
Solvent Atoms191
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing