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Crystal structure of the F4 fimbrial adhesin FaeG in complex with lactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HLR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 100 mM Trizma/Bicine pH 8.5, 0.03 M of each halogen (sodium fluoride, sodium bromide, sodium iodide), 12.5% MPD, 12.5% PEG1000, 12.5% PEG3350
Crystal Properties Matthews coefficient Solvent content 4.13 70.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.194 α = 90 b = 93.194 β = 90 c = 110.95 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 47.67 99.9 19.9 8.7 22359
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 2.1 8.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3HLR 2.3 47.67 21174 1143 99.9 0.19438 0.19243 0.2064 0.23029 0.237 RANDOM 43.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.61 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.906 r_dihedral_angle_4_deg 21.978 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_1_deg 6.891 r_long_range_B_refined 6.62 r_long_range_B_other 6.619 r_scangle_other 5.184 r_scbond_it 3.608 r_scbond_other 3.606 r_mcangle_it 3.419
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.906 r_dihedral_angle_4_deg 21.978 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_1_deg 6.891 r_long_range_B_refined 6.62 r_long_range_B_other 6.619 r_scangle_other 5.184 r_scbond_it 3.608 r_scbond_other 3.606 r_mcangle_it 3.419 r_mcangle_other 3.418 r_mcbond_it 2.426 r_mcbond_other 2.423 r_angle_refined_deg 1.942 r_angle_other_deg 0.849 r_chiral_restr 0.107 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1898 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing