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Crystal structure of class C beta-lactamase Mox-1 covalently complexed with aztorenam
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 PEG8000, cacodylate, zinc acetate
Crystal Properties Matthews coefficient Solvent content 2.2 44.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.54 α = 90 b = 59.25 β = 102.72 c = 62.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2013-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 60.95 99.36 0.079 7.75 6.77 27737
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 29.72 26361 1348 99.06 0.17716 0.17524 0.1851 0.21422 0.2187 RANDOM 19.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.844 r_dihedral_angle_4_deg 13.495 r_dihedral_angle_3_deg 11.804 r_dihedral_angle_1_deg 6.025 r_long_range_B_refined 4.405 r_long_range_B_other 4.246 r_scangle_other 2.739 r_mcangle_it 1.769 r_mcangle_other 1.768 r_scbond_it 1.666
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.844 r_dihedral_angle_4_deg 13.495 r_dihedral_angle_3_deg 11.804 r_dihedral_angle_1_deg 6.025 r_long_range_B_refined 4.405 r_long_range_B_other 4.246 r_scangle_other 2.739 r_mcangle_it 1.769 r_mcangle_other 1.768 r_scbond_it 1.666 r_scbond_other 1.665 r_angle_refined_deg 1.392 r_mcbond_other 1.084 r_mcbond_it 1.083 r_angle_other_deg 0.789 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2612 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement