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Crystal structure of Escherichia coli Tryptophanase in 'semi-holo' form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 13-16 % AMMONIUM SULFATE, 1-5 MM PLP, 50 MM TRIS
Crystal Properties Matthews coefficient Solvent content 3.44 64.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.971 α = 90 b = 109.971 β = 90 c = 238.403 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2005-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 15 94.8 0.124 19.2 5.9 22389
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.3 97.2 0.519 3.1 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.2 15 22389 1207 94.73 0.21772 0.21377 0.2124 0.28972 0.2887 RANDOM 84.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.84 2.84 -5.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.153 r_dihedral_angle_3_deg 24.374 r_dihedral_angle_4_deg 21.484 r_dihedral_angle_1_deg 8.4 r_scangle_it 3.688 r_angle_refined_deg 2.385 r_scbond_it 2.136 r_mcangle_it 1.739 r_mcbond_it 0.918 r_chiral_restr 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.153 r_dihedral_angle_3_deg 24.374 r_dihedral_angle_4_deg 21.484 r_dihedral_angle_1_deg 8.4 r_scangle_it 3.688 r_angle_refined_deg 2.385 r_scbond_it 2.136 r_mcangle_it 1.739 r_mcbond_it 0.918 r_chiral_restr 0.15 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6840 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement