4V9N
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | 7 | pH 7.0 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.4 | 63.17 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 212.07 | α = 90 |
b = 454.4 | β = 90 |
c = 618.45 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | 2012-08-02 | M | SINGLE WAVELENGTH | ||||||||
2 | 1 | x-ray | 100 | 2012-02-12 | M | SINGLE WAVELENGTH | ||||||||
3 | 1 | x-ray | 100 | 2012-02-29 | M | SINGLE WAVELENGTH | ||||||||
4 | 1 | x-ray | 100 | 2011-12-16 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SSRL BEAMLINE BL7-1 | SSRL | BL7-1 | |
2 | SYNCHROTRON | ALS BEAMLINE 12.3.1 | ALS | 12.3.1 | |
3 | SYNCHROTRON | SSRL BEAMLINE BL9-1 | SSRL | BL9-1 | |
4 | SYNCHROTRON | SSRL BEAMLINE BL11-1 | SSRL | BL11-1 |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||||
1 | 3.4 | 50 | 7 | 807927 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Starting model | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | PDB ENTRY 3F1G AND 3F1H | 3.4 | 49.672 | 1.99 | 807927 | 16161 | 99.65 | 0.235 | 0.2343 | 0.2681 | RANDOM |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-3.5525 | 14.5549 | -11.0024 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 18.745 |
f_angle_d | 0.621 |
f_chiral_restr | 0.053 |
f_bond_d | 0.004 |
f_plane_restr | 0.003 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 21929 |
Nucleic Acid Atoms | 34186 |
Solvent Atoms | |
Heterogen Atoms | 1285 |
Software
Software | |
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Software Name | Purpose |
PHENIX | refinement |
CNS | refinement |
XDS | data scaling |
XDS | data reduction |
CNS | phasing |