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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F1E PDB ENTRIES 3F1E, 3F1F, 2WRI, AND 2WRJ experimental model PDB 3F1F PDB ENTRIES 3F1E, 3F1F, 2WRI, AND 2WRJ experimental model PDB 2WRI PDB ENTRIES 3F1E, 3F1F, 2WRI, AND 2WRJ experimental model PDB 2WRJ PDB ENTRIES 3F1E, 3F1F, 2WRI, AND 2WRJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.9% PEG20000, 2.8% PPG P400, 5.1% PEG550 MME, 200 mM potassium thiocyanate, Tris acetate
Crystal Properties Matthews coefficient Solvent content 4.04 69.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 302.3911 α = 90 b = 683.9183 β = 89.9983 c = 356.6977 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-06-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03322 APS 23-ID-D 2 SYNCHROTRON ALS BEAMLINE 12.3.1 1.116 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.86 40 96 0.336 5.1 3.8 462446 2 1.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 3F1E, 3F1F, 2WRI, AND 2WRJ 3.86 40 2 462446 21618 0.264 0.264 0.2702 0.3166 0.3168 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation o_angle_deg 1.101 o_bond_d 0.022
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24442 Nucleic Acid Atoms 34502 Solvent Atoms Heterogen Atoms 33
Software Software Software Name Purpose XDS data scaling PHASER phasing CNS refinement XDS data reduction SCALA data scaling