4V1X

The structure of the hexameric atrazine chlorohydrolase, AtzA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.3THE PROTEIN (AFTER HIS-TAG REMOVAL) WAS CONCENTRATED TO 11 MG/ML AND SET IN A 1:1 RATIO, 200 NL PLUS 200 NL, WITH 50 MM HEPES PH 7.3, 4.6 % PEG 10,000.
Crystal Properties
Matthews coefficientSolvent content
2.6854.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 117.269α = 90
b = 146.056β = 90
c = 196.361γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2014-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX2Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.248.799.60.2411.615.1170140
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2499.21.153.215.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2117.19161715834599.460.167030.165530.19631RANDOM24.204
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.810.87-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.535
r_dihedral_angle_4_deg17.527
r_dihedral_angle_3_deg14.474
r_dihedral_angle_1_deg6.05
r_scbond_it4.096
r_mcangle_it3.832
r_mcbond_it2.621
r_mcbond_other2.62
r_angle_refined_deg1.675
r_angle_other_deg1.388
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.535
r_dihedral_angle_4_deg17.527
r_dihedral_angle_3_deg14.474
r_dihedral_angle_1_deg6.05
r_scbond_it4.096
r_mcangle_it3.832
r_mcbond_it2.621
r_mcbond_other2.62
r_angle_refined_deg1.675
r_angle_other_deg1.388
r_chiral_restr0.097
r_bond_refined_d0.017
r_gen_planes_refined0.011
r_bond_other_d0.009
r_gen_planes_other0.007
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms22046
Nucleic Acid Atoms
Solvent Atoms887
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing