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Structural and functional characterization of a novel monotreme- specific protein from the milk of the platypus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.6 281 THE PROTEIN WAS AT 4 MG/ML IN TRIS BUFFERED SALINE; THE RESERVOIR WAS 68 MM AMMONIUM ACETATE, 25.1% W/V PEG 8K, 100 MM SODIUM CACODYLATE BUFFER AT PH 6.6; DONE AT 8C.
Crystal Properties Matthews coefficient Solvent content 2.73 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.152 α = 80.15 b = 59.721 β = 82.98 c = 63.074 γ = 89.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 46.75 99.5 0.09 15.1 7.4 72773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.86 91.2 0.81 2.2 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.82 61.68 69095 3676 99.42 0.16702 0.16591 0.1768 0.18786 0.1929 RANDOM 21.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.53 0.39 0.24 -0.24 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.519 r_dihedral_angle_4_deg 15.162 r_dihedral_angle_3_deg 13.376 r_dihedral_angle_1_deg 6.307 r_scbond_it 1.817 r_mcangle_it 1.771 r_angle_refined_deg 1.162 r_mcbond_it 1.125 r_mcbond_other 1.123 r_angle_other_deg 0.791
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.519 r_dihedral_angle_4_deg 15.162 r_dihedral_angle_3_deg 13.376 r_dihedral_angle_1_deg 6.307 r_scbond_it 1.817 r_mcangle_it 1.771 r_angle_refined_deg 1.162 r_mcbond_it 1.125 r_mcbond_other 1.123 r_angle_other_deg 0.791 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5425 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 46
Software Software Software Name Purpose XDS data reduction Aimless data scaling Auto-Rickshaw phasing PHASER phasing REFMAC refinement