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STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM V - SOS COMPLEX - 1.9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20 %W/V PEG3350, 0.2 M AMMONIUM SULFATE 20MM SOS, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.455 α = 90 b = 69.953 β = 90 c = 195.811 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 34.4 99.2 0.09 7.7 3.9 72075 -3 27.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.9 97.9 70963 1038 98.87 0.19518 0.19455 0.2046 0.23513 0.2376 RANDOM 38.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.32 0.13 -2.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.456 r_dihedral_angle_4_deg 21.442 r_dihedral_angle_3_deg 15.363 r_dihedral_angle_1_deg 6.6 r_mcangle_it 3.224 r_scbond_it 3.222 r_mcbond_it 2.075 r_mcbond_other 2.071 r_angle_refined_deg 1.744 r_angle_other_deg 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.456 r_dihedral_angle_4_deg 21.442 r_dihedral_angle_3_deg 15.363 r_dihedral_angle_1_deg 6.6 r_mcangle_it 3.224 r_scbond_it 3.222 r_mcbond_it 2.075 r_mcbond_other 2.071 r_angle_refined_deg 1.744 r_angle_other_deg 0.867 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5662 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling