☰ Navigation Tabs
Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 17.5% PEG 400, 5% GLYCEROL BUFFERED IN 100 MM SODIUM ACETATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 4.12 73.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.86 α = 90 b = 100.86 β = 90 c = 197.47 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 30 97.8 0.08 9.09 2.18 30821
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.4 95.9 0.64 1.74 2.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 3.22 89.82 16238 854 99.3 0.19365 0.1916 0.1987 0.23315 0.2341 RANDOM 123.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.44 3.44 -6.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.828 r_dihedral_angle_4_deg 21.631 r_dihedral_angle_3_deg 19.484 r_long_range_B_refined 7.091 r_long_range_B_other 7.091 r_dihedral_angle_1_deg 6.991 r_mcangle_it 4.816 r_mcangle_other 4.813 r_scangle_other 4.189 r_mcbond_it 2.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.828 r_dihedral_angle_4_deg 21.631 r_dihedral_angle_3_deg 19.484 r_long_range_B_refined 7.091 r_long_range_B_other 7.091 r_dihedral_angle_1_deg 6.991 r_mcangle_it 4.816 r_mcangle_other 4.813 r_scangle_other 4.189 r_mcbond_it 2.79 r_mcbond_other 2.788 r_scbond_it 2.52 r_scbond_other 2.519 r_angle_refined_deg 1.116 r_angle_other_deg 1.071 r_chiral_restr 0.072 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1377 Nucleic Acid Atoms 2882 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing