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X-ray crystal structure of human TNKS in complex with a small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R5F PDB ENTRY 2R5F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.1M MES PH 6.0, 0.1M AMMONIUM TATRATE, 12-16% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.12 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.589 α = 71.38 b = 82.312 β = 67.31 c = 86.727 γ = 89.51
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.37 46.92 99.1 0.09 3.5 3.2 27052 37.27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.37 3.57 98.6 1.12 1.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2R5F 3.37 46.923 0.02 27052 2714 98.94 0.2688 0.266 0.247 0.3218 0.2991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.665 f_angle_d 0.474 f_chiral_restr 0.021 f_bond_d 0.002 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12693 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 216
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing