4UHE

Structural studies of a thermophilic esterase from Thermogutta terrifontis (malate bound)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0640.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.33α = 90
b = 43.33β = 90
c = 227.06γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1637.5298.60.0912.29.6860542
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.161.1995.60.962.29.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2XUA1.1637.5281741425598.270.108540.106790.14224RANDOM15.146
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free41.582
r_dihedral_angle_2_deg30.398
r_dihedral_angle_4_deg17.151
r_dihedral_angle_3_deg14.358
r_sphericity_bonded13.48
r_dihedral_angle_1_deg5.607
r_scbond_it4.018
r_mcangle_it2.506
r_mcbond_it2.177
r_rigid_bond_restr2.16
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free41.582
r_dihedral_angle_2_deg30.398
r_dihedral_angle_4_deg17.151
r_dihedral_angle_3_deg14.358
r_sphericity_bonded13.48
r_dihedral_angle_1_deg5.607
r_scbond_it4.018
r_mcangle_it2.506
r_mcbond_it2.177
r_rigid_bond_restr2.16
r_angle_refined_deg1.834
r_mcbond_other1.81
r_angle_other_deg1.072
r_chiral_restr0.106
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2087
Nucleic Acid Atoms
Solvent Atoms462
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing