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Structure-based design of a novel series of azetidine inhibitors of the hepatitis C virus NS3/4A serine protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 PEG
Crystal Properties Matthews coefficient Solvent content 2.21 44.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.691 α = 90 b = 143.197 β = 90 c = 240.55 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2008-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.919 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 49.15 99.6 0.133 8.4 57364
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.91 99.6 0.793 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.84 49.15 56366 997 100 0.22167 0.22088 0.26657 0.227 RANDOM 71.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -1.07 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.245 r_dihedral_angle_3_deg 16.151 r_dihedral_angle_4_deg 13.91 r_dihedral_angle_1_deg 5.952 r_angle_refined_deg 1.105 r_scangle_it 0.989 r_angle_other_deg 0.918 r_scbond_it 0.616 r_mcangle_it 0.415 r_mcbond_it 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.245 r_dihedral_angle_3_deg 16.151 r_dihedral_angle_4_deg 13.91 r_dihedral_angle_1_deg 5.952 r_angle_refined_deg 1.105 r_scangle_it 0.989 r_angle_other_deg 0.918 r_scbond_it 0.616 r_mcangle_it 0.415 r_mcbond_it 0.324 r_nbd_refined 0.193 r_symmetry_vdw_other 0.171 r_nbtor_refined 0.169 r_nbd_other 0.168 r_symmetry_hbond_refined 0.162 r_symmetry_vdw_refined 0.139 r_xyhbond_nbd_refined 0.13 r_nbtor_other 0.08 r_chiral_restr 0.056 r_mcbond_other 0.044 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17038 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 647
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling