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The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V7Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.2 295 PEG 4000, Tris-HCl, magnesium chloride, EDTA, ATP, NaCl, spermidine
Crystal Properties Matthews coefficient Solvent content 3.16 61.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.385 α = 90 b = 154.545 β = 90 c = 272.04 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2012-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.21 67.12 97.5 0.078 7.6 2.5 73010
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.21 3.28 99.1 2.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2v7q 3.21 136.02 72985 3688 96.71 0.2443 0.2422 0.2419 0.2834 0.2798 RANDOM 93.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.32 3.38 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.045 r_dihedral_angle_3_deg 10.612 r_dihedral_angle_4_deg 9.464 r_dihedral_angle_1_deg 3.665 r_mcangle_it 1.691 r_mcbond_it 0.946 r_mcbond_other 0.945 r_angle_refined_deg 0.732 r_angle_other_deg 0.655 r_chiral_restr 0.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.045 r_dihedral_angle_3_deg 10.612 r_dihedral_angle_4_deg 9.464 r_dihedral_angle_1_deg 3.665 r_mcangle_it 1.691 r_mcbond_it 0.946 r_mcbond_other 0.945 r_angle_refined_deg 0.732 r_angle_other_deg 0.655 r_chiral_restr 0.064 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23918 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 181
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing Coot model building PDB_EXTRACT data extraction MOSFLM data reduction