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Crystal Structure of the Human LIMK2 Kinase Domain In Complex With a Non-ATP Competitive Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 The purified protein was used in crystallisation trials employing both, a standard screen with approximately 1200 different conditions, as well as crystallisation conditions identified using literature data.
Crystal Properties Matthews coefficient Solvent content 2.46 50.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.569 α = 90 b = 77.903 β = 100.84 c = 86.387 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 84.82 97.6 0.053 3.9 20794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.77 87.8 0.724 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 84.82 19409 919 97.81 0.22294 0.22046 0.2164 0.27413 0.2775 RANDOM 49.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -2.53 -2.08 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.888 r_dihedral_angle_4_deg 16.812 r_dihedral_angle_3_deg 13.244 r_dihedral_angle_1_deg 5.075 r_scangle_it 2.803 r_scbond_it 1.895 r_mcangle_it 1.338 r_mcbond_it 1.048 r_angle_refined_deg 0.932 r_angle_other_deg 0.719
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.888 r_dihedral_angle_4_deg 16.812 r_dihedral_angle_3_deg 13.244 r_dihedral_angle_1_deg 5.075 r_scangle_it 2.803 r_scbond_it 1.895 r_mcangle_it 1.338 r_mcbond_it 1.048 r_angle_refined_deg 0.932 r_angle_other_deg 0.719 r_nbd_refined 0.2 r_nbtor_refined 0.175 r_mcbond_other 0.174 r_nbd_other 0.159 r_symmetry_vdw_other 0.124 r_xyhbond_nbd_refined 0.118 r_symmetry_vdw_refined 0.104 r_nbtor_other 0.078 r_chiral_restr 0.056 r_symmetry_hbond_refined 0.035 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4417 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement