4RU5

Crystal Structure of the Pseudomonas phage phi297 tailspike gp61

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	291	17% Glycerol, 11% PEG 4000, 0.1M Hepes pH 7.0 15 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 291K
2	VAPOR DIFFUSION, HANGING DROP	7	291	12% PEG 4000, 0.2M Amm acetate, 0.1M Hepes pH 7.0 20 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 210.617	α = 90
b = 124.705	β = 97.93
c = 83.563	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2012-12-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.0	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.52	46.47	98.1	0.038	0.052	16.8	3.4	321302			2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.52	1.6	94.8		0.3	0.384	3.8	3.3	45160

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.52	46.37	2	321302	305236	16066	98.04	0.08081	0.08081	0.07876	0.11953	RANDOM	18.103

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.02		0.05	0.06		-0.04

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	60.422
r_dihedral_angle_2_deg	33.595
r_sphericity_bonded	15.032
r_dihedral_angle_4_deg	14.705
r_dihedral_angle_3_deg	10.961
r_long_range_B_refined	7.928
r_long_range_B_other	7.928
r_dihedral_angle_1_deg	6.827
r_rigid_bond_restr	5.409
r_scangle_other	3.675
r_scbond_it	3.513
r_scbond_other	3.513
r_mcangle_it	2.589
r_mcangle_other	2.589
r_mcbond_it	2.3
r_mcbond_other	2.274
r_angle_refined_deg	1.784
r_angle_other_deg	1.391
r_chiral_restr	0.121
r_bond_refined_d	0.019
r_gen_planes_refined	0.012
r_bond_other_d	0.009
r_gen_planes_other	0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13474
Nucleic Acid Atoms
Solvent Atoms	3133
Heterogen Atoms	96

Software

Software
Software Name	Purpose
RemDAq	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling