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Human Obscurin Ig58 Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CR6 2CR6, 2YZ8, 2E7B, 2RQ8 experimental model PDB 2YZ8 2CR6, 2YZ8, 2E7B, 2RQ8 experimental model PDB 2E7B 2CR6, 2YZ8, 2E7B, 2RQ8 experimental model PDB 2RQ8 2CR6, 2YZ8, 2E7B, 2RQ8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 298 0.3-0.5M NaCl
19-23% PEG 3350
10.52-11.35 mg/ml, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.482 α = 90 b = 44.482 β = 90 c = 177 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 170 CCD ADSC QUANTUM 315r 2014-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.411 37.64 95.8 0.03344 0.04104 29.47 3.2 4329 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.56 2.62 69.2 0.3173 0.04104 3.08 3.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2CR6, 2YZ8, 2E7B, 2RQ8 2.41 37.64 2 11201 4329 433 0.26 0.26 0.2719 0.28 0.2884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_bond_d 0.02 f_angle_d f_dihedral_angle_d f_chiral_restr f_plane_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 706 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling PHASER phasing PHENIX refinement