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Crystal structure of the light and hvem complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4KG8 PDB ENTRY 4KG8, 4FHQ experimental model PDB 4FHQ PDB ENTRY 4KG8, 4FHQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 290 0.2M MAGNESIUM CHLORIDE, 0.1M BIS:TRIS BUFFER, 9% W/V PEG3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290.0K
Crystal Properties Matthews coefficient Solvent content 2.65 53.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.651 α = 90 b = 113.604 β = 90 c = 163.279 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.9 0.125 0.084 21.7 10.8 92792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 99.7 0.936 0.818 3.1 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4KG8, 4FHQ 2.3 48.92 87967 4631 99.82 0.19052 0.1883 0.1941 0.23145 0.2342 RANDOM 38.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.569 r_dihedral_angle_4_deg 20.534 r_dihedral_angle_3_deg 17.347 r_dihedral_angle_1_deg 7.87 r_long_range_B_other 7.438 r_long_range_B_refined 7.437 r_scangle_other 5.299 r_mcangle_it 4.383 r_mcangle_other 4.199 r_scbond_it 3.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.569 r_dihedral_angle_4_deg 20.534 r_dihedral_angle_3_deg 17.347 r_dihedral_angle_1_deg 7.87 r_long_range_B_other 7.438 r_long_range_B_refined 7.437 r_scangle_other 5.299 r_mcangle_it 4.383 r_mcangle_other 4.199 r_scbond_it 3.722 r_scbond_other 3.524 r_mcbond_it 2.838 r_mcbond_other 2.834 r_angle_refined_deg 2.081 r_angle_other_deg 0.893 r_chiral_restr 0.107 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11198 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 132
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling