☰ Navigation Tabs
Crystal Structure of Human Glutaredoxin with MESNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KTE PDB entry 1KTE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 20% PEG 8K, 0.1 M phosphate citrate, 0.2M NaCl, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.847 α = 90 b = 55.414 β = 90 c = 130.357 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 27.71 70.4 0.051 19.5 5.3 31162 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.13 13.2 0.45 2.3 2.5 824
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1KTE 1.08 27.71 29546 1570 0.17339 0.17221 0.19517 0.2035 RANDOM 12.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.26 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.783 r_dihedral_angle_3_deg 12.235 r_dihedral_angle_4_deg 8.512 r_dihedral_angle_1_deg 5.606 r_scangle_it 3.068 r_sphericity_free 2.508 r_sphericity_bonded 2.369 r_scbond_it 1.919 r_mcangle_it 1.563 r_angle_refined_deg 1.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.783 r_dihedral_angle_3_deg 12.235 r_dihedral_angle_4_deg 8.512 r_dihedral_angle_1_deg 5.606 r_scangle_it 3.068 r_sphericity_free 2.508 r_sphericity_bonded 2.369 r_scbond_it 1.919 r_mcangle_it 1.563 r_angle_refined_deg 1.163 r_rigid_bond_restr 1.101 r_mcbond_it 0.933 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 820 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 14
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling