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PaMorA tandem diguanylate cyclase - phosphodiesterase, c-di-GMP complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.2M sodium thiocyanate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.42 49.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.3 α = 90 b = 81.3 β = 90 c = 128.1 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2012-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97950 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 61.7 100 0.107 14.5 8.1 18546 18513 45.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.52 99.8 0.746 2.6 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.45 61.7 18546 18512 948 99.96 0.1873 0.1844 0.1883 0.243 0.2455 RANDOM 51.096
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.545 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_3_deg 16.563 r_dihedral_angle_1_deg 5.834 r_mcangle_it 5.439 r_mcbond_it 3.568 r_mcbond_other 3.564 r_angle_refined_deg 1.566 r_angle_other_deg 0.815 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.545 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_3_deg 16.563 r_dihedral_angle_1_deg 5.834 r_mcangle_it 5.439 r_mcbond_it 3.568 r_mcbond_other 3.564 r_angle_refined_deg 1.566 r_angle_other_deg 0.815 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3303 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 48
Software Software Software Name Purpose xia2 data reduction REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction xia2 data scaling MOLREP phasing