4RGQ

Crystal structure of the Methanocaldococcus jannaschii G1PDH with NADPH and DHAP

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.6	294	30% (v/v) P550MME/P20K, 0.1 M hepes, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 294K

Crystal Properties
Matthews coefficient	Solvent content
2.47	50.28

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.382	α = 77.52
b = 71.898	β = 79.54
c = 101.697	γ = 75.6

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 210r		2013-06-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX1	0.91160	Australian Synchrotron	MX1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.22	46.66	98.2			77389	76018	1	2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.22	2.35	96.5		0.778	1.8	3.9	10895

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 4RFL	2.23	46.66	77389	71776	3887	97.66	0.1822	0.18452	0.1822	0.22865	RANDOM	36.368

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.71	1.03	0.16	2.99	1.97	-0.42

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.269
r_dihedral_angle_4_deg	18.192
r_dihedral_angle_3_deg	17.961
r_long_range_B_refined	6.826
r_long_range_B_other	6.823
r_dihedral_angle_1_deg	5.336
r_scangle_other	4.869
r_mcangle_it	3.918
r_mcangle_other	3.918
r_scbond_it	3.233
r_scbond_other	3.233
r_angle_other_deg	2.761
r_mcbond_it	2.623
r_mcbond_other	2.623
r_angle_refined_deg	1.591
r_chiral_restr	0.091
r_gen_planes_other	0.023
r_bond_refined_d	0.014
r_gen_planes_refined	0.008
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10366
Nucleic Acid Atoms
Solvent Atoms	464
Heterogen Atoms	316

Software

Software
Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling