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Human Methyltransferase-Like 18
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other from isomorphous crystal
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 293 2.0 M ammonium sulfate, 0.2 M potassium/sodium tartrate, 0.1 M sodium citrate, 0.005 M taurine, 0.005 M SAM, pH 5.6, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.17 61.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.15 α = 90 b = 70.15 β = 90 c = 170.688 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97915 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 100 0.105 14.4 13.5 17502
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.01 2.5 14.5 1803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT from isomorphous crystal 2.4 47.63 17434 875 99.93 0.1987 0.1966 0.2062 0.2378 0.2416 RANDOM 63.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.7 -1.7 3.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.567 r_dihedral_angle_4_deg 15.773 r_dihedral_angle_3_deg 14.496 r_dihedral_angle_1_deg 6.356 r_mcangle_it 3.845 r_mcbond_it 2.514 r_mcbond_other 2.514 r_angle_refined_deg 1.368 r_angle_other_deg 0.713 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.567 r_dihedral_angle_4_deg 15.773 r_dihedral_angle_3_deg 14.496 r_dihedral_angle_1_deg 6.356 r_mcangle_it 3.845 r_mcbond_it 2.514 r_mcbond_other 2.514 r_angle_refined_deg 1.368 r_angle_other_deg 0.713 r_chiral_restr 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2055 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 39
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction