4R4R

Crystal structure of chimeric beta-lactamase cTEM-19m at 1.2 angstrom resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529530% PEG 4000, 0.2M magnesium chloride, 0.1M TrisHCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0540.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.69α = 90
b = 58.79β = 90
c = 109.83γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002011-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.97949CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.231.1398.30.03616.3373668736687.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2391.60.2364.32.65000

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB ENTRY 4QY51.231.136992869928368897.910.106640.106640.105040.13751RANDOM12.242
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.190.120.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.852
r_sphericity_free31.286
r_dihedral_angle_4_deg15.008
r_dihedral_angle_3_deg11.912
r_sphericity_bonded11.267
r_rigid_bond_restr6.064
r_dihedral_angle_1_deg5.755
r_long_range_B_refined4.399
r_long_range_B_other3.282
r_scangle_other2.559
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.852
r_sphericity_free31.286
r_dihedral_angle_4_deg15.008
r_dihedral_angle_3_deg11.912
r_sphericity_bonded11.267
r_rigid_bond_restr6.064
r_dihedral_angle_1_deg5.755
r_long_range_B_refined4.399
r_long_range_B_other3.282
r_scangle_other2.559
r_scbond_it2.209
r_scbond_other2.209
r_angle_refined_deg2.004
r_mcangle_it1.52
r_mcangle_other1.52
r_mcbond_it1.116
r_mcbond_other1.114
r_angle_other_deg0.962
r_chiral_restr0.141
r_bond_refined_d0.021
r_gen_planes_refined0.011
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2011
Nucleic Acid Atoms
Solvent Atoms408
Heterogen Atoms7

Software

Software
Software NamePurpose
MxDCdata collection
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing