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Crystal structure of sugar transporter Oant_3817 from Ochrobactrum anthropi, target EFI-510528, with bound glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 PROTEIN: 10 MM BIS-TRIS, 500 MM NACL, 5% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100 RATIO). RESERVOIR: 1.0 M LITHIUM CHLORIDE, 0.1 M SODIUM CITRATE:HCL, 20% PEG6000, pH 4.0, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.05 40.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.457 α = 90 b = 61.374 β = 103.18 c = 96.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2014-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 50 99.9 0.133 0.133 13 6 57914 -5 19.139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.9 98.2 0.98 0.98 1.6 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.87 36.76 55794 1708 99.33 0.17667 0.17504 0.1757 0.2307 0.2318 RANDOM 24.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.95 -10.61 -14.73 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.62 r_scbond_other 18.815 r_dihedral_angle_4_deg 18.505 r_scbond_it 15.802 r_scangle_other 15.75 r_long_range_B_other 14.663 r_long_range_B_refined 14.535 r_dihedral_angle_3_deg 13.906 r_mcbond_other 7.908 r_mcangle_other 7.655
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.62 r_scbond_other 18.815 r_dihedral_angle_4_deg 18.505 r_scbond_it 15.802 r_scangle_other 15.75 r_long_range_B_other 14.663 r_long_range_B_refined 14.535 r_dihedral_angle_3_deg 13.906 r_mcbond_other 7.908 r_mcangle_other 7.655 r_mcbond_it 7.308 r_mcangle_it 7.133 r_dihedral_angle_1_deg 5.579 r_angle_refined_deg 1.201 r_chiral_restr 0.086 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6036 Nucleic Acid Atoms Solvent Atoms 518 Heterogen Atoms 24
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing