4QY6

Crystal structures of chimeric beta-lactamase cTEM-19m showing different conformations


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529530% PEG 4000, 0.2M magnesium chloride, 0.1M TrisHCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0640.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.84α = 90
b = 58.76β = 90
c = 109.94γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002011-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.97949CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1536.84980.04123.66.183777837776.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.151.1881.40.3722.93.94988

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4ZG41.1536.847949479494421297.820.106470.106470.104770.13884RANDOM12.31
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.820.460.36
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free46.257
r_dihedral_angle_2_deg36.76
r_dihedral_angle_4_deg14.016
r_sphericity_bonded13.896
r_dihedral_angle_3_deg12.106
r_dihedral_angle_1_deg6.054
r_long_range_B_refined5.945
r_rigid_bond_restr5.606
r_long_range_B_other4.325
r_scangle_other3.271
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free46.257
r_dihedral_angle_2_deg36.76
r_dihedral_angle_4_deg14.016
r_sphericity_bonded13.896
r_dihedral_angle_3_deg12.106
r_dihedral_angle_1_deg6.054
r_long_range_B_refined5.945
r_rigid_bond_restr5.606
r_long_range_B_other4.325
r_scangle_other3.271
r_scbond_it3.103
r_scbond_other3.103
r_angle_refined_deg2.07
r_mcangle_it1.553
r_mcangle_other1.552
r_mcbond_it1.144
r_mcbond_other1.144
r_angle_other_deg0.977
r_chiral_restr0.141
r_bond_refined_d0.021
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2015
Nucleic Acid Atoms
Solvent Atoms470
Heterogen Atoms10

Software

Software
Software NamePurpose
MxDCdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling