☰ Navigation Tabs
Crystal structure of inactive HIV-1 protease variant (I50V/A71V) in complex with WT p1-p6 substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 295 ammonium sulfate, sodium citrate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.185 α = 90 b = 63.341 β = 98.27 c = 58.769 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2012-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 50 94.5 0.033 27.39 3.5 69174 20171 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.22 92.3 0.086 8.46 3.4 1987
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.13 24.98 69174 19120 1026 94.19 0.18626 0.18349 0.1923 0.23841 0.2418 RANDOM 26.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.48 0.22 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.476 r_dihedral_angle_3_deg 14.694 r_dihedral_angle_4_deg 11.841 r_dihedral_angle_1_deg 6.46 r_long_range_B_refined 4.534 r_long_range_B_other 4.534 r_angle_refined_deg 1.463 r_mcangle_it 1.265 r_mcangle_other 1.265 r_scangle_other 1.172
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.476 r_dihedral_angle_3_deg 14.694 r_dihedral_angle_4_deg 11.841 r_dihedral_angle_1_deg 6.46 r_long_range_B_refined 4.534 r_long_range_B_other 4.534 r_angle_refined_deg 1.463 r_mcangle_it 1.265 r_mcangle_other 1.265 r_scangle_other 1.172 r_scbond_it 0.755 r_scbond_other 0.755 r_angle_other_deg 0.752 r_mcbond_it 0.75 r_mcbond_other 0.75 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3190 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 16
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling