4Q6V

LpoB C-terminal domain from Salmonella enterica (Sel-Met)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6298.150.1M NaAc pH4.6, 2M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K
Crystal Properties
Matthews coefficientSolvent content
1.8834.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 29.35α = 90
b = 37.93β = 90
c = 98.59γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HE2012-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08B1-10.9795CLSI08B1-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9749.399.782318206
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.0498.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.9749.3782438199.710.223280.220240.29029RANDOM28.992
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.08-3.082
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined7.691
r_long_range_B_other7.691
r_scangle_other6.068
r_scbond_it3.844
r_scbond_other3.84
r_mcangle_it3.779
r_mcangle_other3.777
r_mcbond_it2.556
r_mcbond_other2.545
r_angle_refined_deg1.41
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined7.691
r_long_range_B_other7.691
r_scangle_other6.068
r_scbond_it3.844
r_scbond_other3.84
r_mcangle_it3.779
r_mcangle_other3.777
r_mcbond_it2.556
r_mcbond_other2.545
r_angle_refined_deg1.41
r_angle_other_deg1.274
r_chiral_restr0.08
r_bond_refined_d0.012
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms995
Nucleic Acid Atoms
Solvent Atoms27
Heterogen Atoms

Software

Software
Software NamePurpose
MxDCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling