4Q6L

LpoB C-terminal domain from Salmonella enterica (Native)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.6298.150.1M NaAc, 2M ammonium sulfate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K
Crystal Properties
Matthews coefficientSolvent content
1.8734.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 28.98α = 90
b = 37.76β = 90
c = 98.4γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HE2012-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08B1-11.0CLSI08B1-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.249.299.571181588822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.3298.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.249.25612558426699.250.250930.248720.29685RANDOM33.831
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.742.720.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.163
r_dihedral_angle_4_deg24.896
r_sphericity_bonded24.591
r_dihedral_angle_3_deg19.119
r_rigid_bond_restr11.619
r_dihedral_angle_1_deg5.095
r_long_range_B_refined4.973
r_scbond_it4.794
r_mcangle_it4.058
r_mcbond_it3.441
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.163
r_dihedral_angle_4_deg24.896
r_sphericity_bonded24.591
r_dihedral_angle_3_deg19.119
r_rigid_bond_restr11.619
r_dihedral_angle_1_deg5.095
r_long_range_B_refined4.973
r_scbond_it4.794
r_mcangle_it4.058
r_mcbond_it3.441
r_angle_refined_deg1.454
r_chiral_restr0.06
r_bond_refined_d0.009
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms995
Nucleic Acid Atoms
Solvent Atoms12
Heterogen Atoms

Software

Software
Software NamePurpose
MxDCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling