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Crystal structure of a beta-barrel like protein (ABAYE2633) from Acinetobacter baumannii AYE at 1.43 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 1.0M lithium chloride, 20.0% polyethylene glycol 6000, 0.1M citric acid pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.338 α = 90 b = 99.178 β = 90 c = 48.677 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) 2013-11-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.9798,0.97913 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 24.978 95.1 0.036 12.43 27406 -3 14.239
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.48 95.4 0.342 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.43 24.978 27406 1378 98.33 0.1199 0.1181 0.1174 0.1528 0.1519 RANDOM 19.2014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.14 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.19 r_sphericity_free 30.272 r_dihedral_angle_4_deg 22.331 r_dihedral_angle_3_deg 11.947 r_sphericity_bonded 9.694 r_dihedral_angle_1_deg 6.722 r_mcangle_it 3.26 r_rigid_bond_restr 3.163 r_mcbond_it 2.748 r_mcbond_other 2.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.19 r_sphericity_free 30.272 r_dihedral_angle_4_deg 22.331 r_dihedral_angle_3_deg 11.947 r_sphericity_bonded 9.694 r_dihedral_angle_1_deg 6.722 r_mcangle_it 3.26 r_rigid_bond_restr 3.163 r_mcbond_it 2.748 r_mcbond_other 2.718 r_angle_refined_deg 1.581 r_angle_other_deg 0.827 r_chiral_restr 0.115 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1233 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 34
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing autoSHARP phasing