☰ Navigation Tabs
Crystal structure of POB3 middle domain at 1.65A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 287 0.1M Sodium malonate pH 7.0, 0.1M Ammonium acetate, 20% w/v PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.38 48.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.08 α = 90 b = 59.15 β = 90 c = 144.93 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 72.46 33101 31370 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 28.98 33101 31370 1670 99.63 0.2157 0.21407 0.2225 0.24813 0.2541 RANDOM 26.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.54 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.638 r_dihedral_angle_4_deg 13.763 r_dihedral_angle_3_deg 12.496 r_dihedral_angle_1_deg 6.39 r_long_range_B_refined 3.617 r_long_range_B_other 3.433 r_mcangle_it 2.439 r_scangle_other 1.93 r_mcangle_other 1.91 r_scbond_it 1.655
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.638 r_dihedral_angle_4_deg 13.763 r_dihedral_angle_3_deg 12.496 r_dihedral_angle_1_deg 6.39 r_long_range_B_refined 3.617 r_long_range_B_other 3.433 r_mcangle_it 2.439 r_scangle_other 1.93 r_mcangle_other 1.91 r_scbond_it 1.655 r_mcbond_it 1.526 r_mcbond_other 1.525 r_angle_refined_deg 1.427 r_scbond_other 1.152 r_angle_other_deg 0.753 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1823 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 7
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling